PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0069s0046.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 318aa    MW: 36087.2 Da    PI: 7.2608
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0069s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.88.2e-3288192199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k ltpsdv+k++rlv+pk++ae+h      +g   +++ l++ede g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++
  Kalax.0069s0046.1.p  88 FEKPLTPSDVGKLNRLVIPKQHAERHfplntsNGADSGGMLLSFEDEAGKFWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFER 177
                          99***************************9995566799**************************************************8 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                          + ++  +l+++++r+
  Kalax.0069s0046.1.p 178 HPTDPDRLFIGWRRR 192
                          87788889****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-4079200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-3087194IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-2887181No hitNo description
SMARTSM010194.3E-2388193IPR003340B3 DNA binding domain
PfamPF023625.3E-2988192IPR003340B3 DNA binding domain
PROSITE profilePS5086314.18488193IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSVNQISPEF LWWSPHHPQQ QQPLVTNSPN SAHNPKSLVF AHHFQNFNLN NPNDNEDDDD  60
RRAEQMNSNN NNNGGSQQQQ QQQLEVMFEK PLTPSDVGKL NRLVIPKQHA ERHFPLNTSN  120
GADSGGMLLS FEDEAGKFWR FRYSYWNSSQ SYVLTKGWSR YVKEKRLDAG DVVLFERHPT  180
DPDRLFIGWR RRHDPAHQSN SAAAVSGRGL SYPAHHHHHQ SYPAHQYRPD PEAYAGGNLV  240
KTGSFNGSSS SRTLRLFGVN MEYQCESDQS EPATPDGSSA SSPSRQAVYQ HYYTHFYPQA  300
SYGMTSHIDA SHSQHRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-478519211117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600246.11e-76PREDICTED: B3 domain-containing protein At2g36080-like isoform X2
SwissprotQ8GYJ24e-70Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLF6HKN62e-73F6HKN6_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g02810.t015e-73(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-67B3 family protein